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When using the query widget with both WMS and non-WMS layers, the query will return no results unless you select a feature from a WMS layer.
turns out that map_query.php in common/wrapper was causing the problem because it was querying the map object instead of the layer object, which was returning a non-success result. This also has a large performance gain since every layer in the map was being queried multiple times. Now layers are only queried once. Changes committed to CVS (php_utils/src/wrapper/map_query.php)