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When you add a new server in the "Manage Layers" window, this new server should be selected in the dropdown and shown in the tree menu of the WMSBrowser window when you close the "manager layers" window.
Actually, when I used the OGC Sample (Chameleon 1.99b2, Mozilla 1.4, Linux), the new server was not even added to the drop down list after closing the manage servers window. I have to close the WMS Browser window and reopen it for the new server to show up.
julien fixed that issue in CVS this morning :)
fixed by julien and me in CVS.
Changing Version to 1.99 (2.0 not being worked on yet).